Using Zotero with RStudio

A guide to integrating Zotero reference management with RStudio for academic writing.

Using Zotero with RStudio

Zotero is a free, open-source reference manager that helps you collect, organize, cite, and share research. Integrating Zotero with RStudio can streamline your academic writing workflow, especially when using Quarto or R Markdown documents.

1. Install Zotero

  • Download Zotero from zotero.org.
  • Install the Zotero Connector for your web browser to easily save references.

2. Organize Your References

  • Use Zotero to collect and organize references into collections.
  • Attach PDFs and notes to your references for easy access.

3. Export References for RStudio

  • BibTeX Export:
    • Right-click a collection or selected items in Zotero.
    • Choose Export Collection... or Export Items....
    • Select BibTeX as the format and save the .bib file.
  • Better BibTeX Plugin:
    • Install the Better BibTeX plugin for advanced citation key management and automatic export.

4. Use References in RStudio (Quarto/R Markdown)

  • Place your exported .bib file in your project directory (e.g., references.bib).
  • In your Quarto or R Markdown document YAML header, add:
bibliography: references.bib
csl: apa.csl  # Optional: for citation style
  • Cite references in your text using @citationkey (e.g., @smith2020).

5. Render Your Document

  • Knit or render your document in RStudio. Citations and bibliography will be formatted automatically.

6. Tips

  • Keep your .bib file updated as you add new references.
  • Use the Better BibTeX auto-export feature to keep your bibliography in sync.
  • Explore citation styles by downloading .csl files from Zotero Style Repository.

For more help, visit the Zotero Documentation or the Quarto Citations Guide.